Quote:
Originally Posted by RogB
The refractive index isn't affected by scratches as it's an intrinsic property to the polymer - they wont scatter any more light in water as the indices still match. In air, as the refractive index of the polymer and air already differs significantly you will see the scratches just as you can see the tippet.
What may happen with scratches is that they trap small air bubbles which will reflect very strongly under water or general grease and grime from fingerprints which will also scatter light. Most likely is that the layer of mud is visible on the flourocarbon as mud is opaque and absorbs light. Best bet is to degrease it as best as possible such that it cuts through the surface using as thin a layer of mud as possible, or thin it with washing up liquid.

RogB
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Quite right Rogb, the above is true.
As regards degreasing the tippet, some of the most effective still water dry
fly anglers do this to their fluorocarbon leaders. Even degreasing the leaders doesn't always cause them to sink, especially in a flat calm when the surface tension is at its strongest. One of the best expedients I have found is to apply a tiny, and I mean tiny amount of tungsten putty (Kryston Ultra Heavy Metal is the best) to the leader, about 18 inches from the fly. You have to get the amount right, too much and the fly sinks, too little and the leader wont sink.
Another way is to use a weighted fly on a dropper, fishing clothes line style. The only problem here is you can't adjust the weight like you can with the tungsten putty.